Top 50 Accounting Software for CPA Firms to Use in 2025
From payroll systems to tax compliance, the accounting software for CPA firms associated with your firm plays a vital role in both managing finances and providing services to clients. This, in turn, increases the total value of work done that is billable while decreasing the amount of busy work to be done.
For that reason, we prepared a list of the most sophisticated accounting packages that the best CPAs use so that you can make an informed decision. These programs stand out by their automation features, accuracy of the generated reports, and overall increase in performance.
As indicated by 6Sense, more than 220,742 companies employ accounting tools to optimize their financial processes, with QuickBooks capturing the market at 37.67%, serving over 83,000 customers. NetSuite is 8.59%, and Cognos has 5.93% of the market. These tools are most widely used in the Accounting (4,606 companies), Bookkeeping (3,351 companies), and Consulting (3,234 companies) industries.
These figures underscore why the most effective accounting software for CPA firms is critical, assisting firms in enhancing operational productivity, compliance, and strategic financial insight.
Xero is a cloud-based accounting software designed for small firms, sole traders, accountants, and bookkeepers. With an intuitive interface and powerful automation, Xero helps firms manage finances effortlessly.
FreshBooks is a user-friendly accounting software ideal for freelancers and small firms. It simplifies invoicing, automates billing, tracks expenses, and delivers real-time financial insights.
NetSuite is a powerful cloud-based accounting solution for growing firms, offering real-time financial visibility and embedded AI. It helps optimize processes like general ledger management, AR/AP automation, cash flow monitoring, and tax compliance.
NetSuite pricing is based on an annual license fee, including core platform access, user count, and optional modules. A one-time implementation fee applies. Pricing scales with firm growth.
Zoho Books is an all-in-one accounting solution designed for growing firms worldwide. With Zoho Books, you can experience sales tax automation, send invoices, generate 1099 reports, and manage expenses. It also covers everything from GST compliance and e-invoicing to bank reconciliation, payroll, and inventory.
QuickBooks simplifies accounting, payroll, and tax management in one powerful platform. Ideal for firms of all sizes, it helps streamline operations and make smarter financial decisions.
Sage Intacct empowers accountants and bookkeepers with intelligent tools to automate workflows, enhance visibility, and grow client relationships. It’s designed to streamline operations and elevate advisory services.
Custom pricing is available upon request based on firm needs.
Wave offers easy-to-use accounting, invoicing, and payment tools tailored for small firm owners. Create professional invoices, manage cash flow, and run payroll effortlessly.
Tipalti’s finance automation suite streamlines AP, mass payments, procurement, and expense management. Gain full visibility and regulatory compliance while managing global operations at scale.
A powerful cloud-based accounting solution built natively on Salesforce. It helps unify sales and finance for real-time insights, workflow automation, and scalability as your firm grows.
Flexible pricing based on firm needs (custom quote)
A complete accounting software suite designed for professional accountants managing multiple clients. Streamlines operations with real-time data syncing and deep integration capabilities.
An affordable solution for small to mid-sized firms offering accounting and payroll services. Includes core features like AP/AR, reporting, and tax form e-filing.
A leading platform for payroll, HR, and benefits, trusted by over 745,000 firms. Ideal for streamlining payroll, compliance, and employee management.
Custom pricing based on firm size and needs.
An easy-to-use HR and payroll platform offering scalable solutions, including PEO and EOR services. Designed to simplify HR operations for growing firms.
A robust all-in-one HR and payroll software built to adapt to firms of all sizes. Offers seamless integration, flexible modules, and advanced reporting.
A feature-rich platform for accounting and tax firms to manage workflows, clients, and billing. Designed for efficiency, collaboration, and firm-wide visibility.
An AI-powered practice management platform tailored for accounting firms of all sizes. It enhances team collaboration, workflow automation, and performance tracking in one centralized system.
A versatile CRM for firms of all sizes to manage contacts, automate marketing, and grow customer relationships effortlessly. Great for both solo professionals and enterprise teams.
A comprehensive firm management platform for tax and accounting professionals. It streamlines everything from document collection to billing, tax workflows, and client communication.
A secure, cloud-based document management and client portal built for accounting firms. It enables efficient document sharing, storage, and collaboration.
A complete payroll, benefits, and HR solution for accountants and small firms. Gusto simplifies compliance and employee engagement and offers advisory tools.
A user-friendly practice management software designed specifically for accounting firms to manage workflow, client communication, and billing. Ideal for teams seeking centralized task tracking and automation.
A free time and billing tool perfect for accountants and HR teams managing multiple clients and projects. Offers strong tracking and invoicing features without overwhelming complexity.
A comprehensive engagement management tool for accounting and audit firms. It integrates working papers, trial balances, and financial data to streamline audit processes.
A goals-based financial planning platform for advisors to engage clients through interactive and personalized planning experiences. Great for visualizing retirement and life goals.
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A comprehensive financial planning suite with robust data aggregation and client engagement tools. Ideal for advisors seeking deep personalization and long-term financial insights.
Cognos is a powerful firm intelligence tool from IBM that helps organizations create customizable reports, uncover trends, and make better decisions using AI and data visualizations.
SAP FICO is an enterprise-grade solution for finance professionals, streamlining accounting, reporting, tax management, and strategic financial planning.
MYOB is a comprehensive firm platform for small to medium enterprises. It offers invoicing, reporting, payment automation, and tax filing tools in a user-friendly interface.
Sage 50cloud combines robust desktop accounting with the flexibility of cloud access, helping small firms seamlessly manage complex finances, inventory, and payroll.
Microsoft Dynamics GP is a robust enterprise resource planning (ERP) solution designed for small and mid-sized firms. It streamlines financials, operations, HR, and supply chain processes. With deep integration into the Microsoft ecosystem, GP offers strong productivity tools and workflow automation.
Epicor Financials is a powerful, cloud-based solution that streamlines financial operations for growing firms. It provides real-time visibility, machine learning, and compliance across jurisdictions.
Workday Financial Management is a comprehensive cloud solution that adapts to your firm. It offers end-to-end automation, insights, and control across your financial processes.
Fiserv powers digital banking and payment innovation for financial institutions and firms. Its technology connects users through real-time financial services across platforms.
Anaplan is a connected planning platform enhanced by AI that is built for enterprise-wide decision-making. It unifies strategic, financial, and operational planning into a single platform.
Quote-based, depending on organization size and use case
Aplos is an all-in-one cloud-based financial platform tailored for nonprofits and faith-based organizations. It offers fund accounting, donor management, and deep analytics.
CBOS is a cloud-based, all-in-one ERP system built for wholesalers, distributors, and retailers. It integrates accounting, inventory, CRM, HR/payroll, and more, offering real-time firm visibility.
Avalara automates tax compliance to help firms save time, reduce errors, and improve accuracy across sales tax filing, research, and license management processes.
Expensify simplifies expense tracking and approval for companies of all sizes. It integrates with leading accounting software and offers corporate cards and cashback.
Basware provides enterprise-level invoice automation and accounts payable solutions powered by AI. It ensures control, compliance, and efficiency across your entire invoice lifecycle.
InsightSoftware connects your financial data from 200+ platforms, providing CFO-ready tools for close, consolidation, tax, and disclosure management with embedded AI.
SAP General Ledger Accounting is a core module of SAP Financials designed to ensure accurate and complete financial reporting. It supports multiple accounting standards and enables integrated legal and management reporting for comprehensive financial transparency.
Bench provides full-service bookkeeping and tax filing for small firms. With dedicated bookkeepers and easy-to-use software, it helps entrepreneurs save time, reduce stress, and make better financial decisions through clear reporting and expert support.
Classe365 is a financial and accounting solution tailored for educational institutions. It simplifies financial workflows like invoicing, reporting, and account tracking, all while offering dashboards customized to individual roles.
FinancialForce is a Salesforce-native cloud accounting solution that provides end-to-end financial management. It’s designed for fast-growing businesses that need real-time data, audit trails, and powerful reporting across departments.
Dext is a bookkeeping automation tool that simplifies expense and invoice data collection. It streamlines data extraction and syncing with accounting platforms, giving bookkeepers more time to focus on strategic tasks.
AvidXchange offers AI-powered AP automation for paperless invoice and payment processes. Connecting with your existing ERP or accounting system enables secure, efficient invoice processing and B2B payment automation, which is ideal for mid to large-sized firms.
BILL is a spend and expense management tool that combines smart corporate cards, budgeting controls, and bill payments in one intuitive platform. It helps firms streamline financial workflows while maintaining strong compliance and visibility.
Zenefits is an all-in-one HR platform that integrates seamlessly with Xero to synchronize payroll, benefits, time-tracking, and compliance. It simplifies HR for small and mid-sized companies while improving payroll visibility and reporting.
Custom: Pricing is available upon request, depending on selected features and team size.
Brightpearl is an integrated ERP and accounting platform for retail and e-commerce firms. It centralizes operations, finances, inventory, and customer data while offering real-time reporting and automation for streamlined workflows.
CosmoLex is a comprehensive legal practice management tool combining case management, billing, and legal accounting in a single platform. Built specifically for law firms, it ensures compliance with trust accounting and delivers real-time financial insights.
Your firm’s success doesn’t stop at accounting software—it also relies on staying compliant and up to date with the latest in continuing education. That’s where MYCPE ONE comes in.
With thousands of companies relying on tools like QuickBooks, NetSuite, and Cognos, it’s clear that choosing the best accounting software for CPA firms is no longer optional—it’s essential. Whether you're managing payroll, tax compliance, or financial forecasting, the right software helps you deliver better client outcomes and optimize internal workflows.
From automation to real-time reporting, modern solutions give CPA firms the competitive edge they need in today's fast-moving financial landscape.
When choosing accounting software for CPA firms, look for features like automated bank reconciliation, project accounting, tax compliance tools, payroll processing, and seamless integrations. These tools reduce manual work, improve accuracy, and allow for better client service.
Yes, many advanced accounting software for CPA firms offer multi-currency support. This is especially useful for firms handling international clients or managing global operations, as it ensures accurate conversions and compliance across currencies.
Absolutely. Reputable cloud-based accounting software for CPA firms uses top-tier encryption, role-based access controls, and regular backups to ensure data security and compliance with financial regulations.
The best accounting software for CPA firms includes built-in tax features that help automate calculations, track deadlines, and generate tax-ready reports. These tools significantly reduce the risk of errors and streamline the tax filing process.
Yes. Leading accounting software for CPA firms integrates with CRMs, payroll systems, practice management tools, and other financial platforms to create a seamless workflow and boost operational efficiency.
Nemin Vora is a Chartered Accountant (equivalent to US CPA) and Tax Attorney, serving as the Director of Client Relations at MYCPE ONE. With over 7 years of experience working with Big 4s and public accounting firms across North America, he's the person you want to talk to when you're thinking about taking your accounting firm global. Nemin is a seasoned leader and a dynamic content creator, weaving stories and insights on tax, leadership, and life that resonate with a wide audience. This creative outlet showcases not only his depth of knowledge but also his ability to connect and inspire. He consults and speaks on various topics, including Building Remote Teams, Remote Working, Offshore Staffing, Strategic Planning, Scalability of Accounting Practice, Cloud Accounting, Practice Management, and AI in Accounting. Outside of work, Nemin is a learner at heart, an actor on the stage, and a tech enthusiast.
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